haddock.clis.restraints.passive_from_active module

haddock3-restraints passive_from_active subcommand.

Given a list of active_residues and a PDB structure, it will return a list of surface exposed passive residues within a 6.5A radius from the active residues.

When provided with a list of surface residues, it will filter the list for those that are within 6.5A from the active residues.

Usage:

haddock3-restraints passive_from_active <pdb_file> <active_list> [-c <chain_id>] [-s <surface_list>]

haddock.clis.restraints.passive_from_active.add_pass_from_act_arguments(pass_from_act_subcommand)[source]

Add arguments to the pass_from_act subcommand.

haddock.clis.restraints.passive_from_active.passive_from_active(structure, active_list, chain_id=None, surface_list='')[source]

Get the passive residues.