haddock3
A brief introduction to HADDOCK3
Installation
Usage
Workflow Examples
Advanced features
Command-line interfaces
Modules
Testing
Contributing to HADDOCK3
Citing
Library Reference
Core Reference
Libs Reference
Subpackages
Submodules
libalign: sequence and structural alignments
libcli: functions helping clients
libclust: functions related to clustering
libcns: creating CNS files
haddock.libs.libfcc module
libfunc: functional-programming helping tools
libhpc: HPC execution functions
libinteractive: functions related to interactive tasks
libio: I/O helping functions
liblog: Logging helping functions
libmath: Math helping functions
libmpi: MPI execution functions
haddock.libs.libnotebooks module
libontology: module communication
libparallel: multiprocessing helping functions
libpdb: PDB helping functions
libplots: plotting functionalities
libprodigy: classes and functions related to the use of prodigy
librestraints: functions related to restraints
libstructure: functions related to structures
libsubprocess: subprocess execution functions
libtimer: timing functions
libutil: utility functions
libworkflow: workflow functions
Module contents
Gear Reference
haddock3
Library Reference
Libs Reference
haddock.libs.libnotebooks module
View page source
haddock.libs.libnotebooks module
Helper functions for HADDOCK3 notebooks
haddock.libs.libnotebooks.
align_full
(
pdb_path1
,
pdb_path2
,
chains
=
['A',
'B']
,
width
=
800
,
height
=
600
,
model1_colors
=
{'A':
'red',
'B':
'orange',
'C':
'pink'}
,
model2_colors
=
{'A':
'blue',
'B':
'green',
'C':
'lime'}
,
atom_types
=
['P',
'C1',
'CA']
,
show_labels
=
False
,
show_per_chain_rmsd
=
True
)
[source]
.
haddock.libs.libnotebooks.
load_pdb_file
(
file_path
)
[source]
.
haddock.libs.libnotebooks.
pdb_string_to_structure
(
pdb_string
,
structure_id
)
[source]
.
haddock.libs.libnotebooks.
structure_to_pdb_string
(
structure
)
[source]
.