# This file was generated by `uv run docs/generated-example-shared-config.py`.
# It is intended to be used as a template for a shared configuration file for Protein Quest.
# If cache parameters change or commands in src/protein_quest/cli/ change, this file should be updated.

[retrieve.pdbe]
cache_dir = "/shared/protein-quest-cache"
copy_method = "symlink"

[retrieve.alphafold]
cache_dir = "/shared/protein-quest-cache"
copy_method = "symlink"

[retrieve.emdb]
cache_dir = "/shared/protein-quest-cache"
copy_method = "symlink"

[retrieve.structure]
cache_dir = "/shared/protein-quest-cache"
copy_method = "symlink"

[filter.confidence]
cache_dir = "/shared/protein-quest-cache"
copy_method = "symlink"

[filter.chain]
cache_dir = "/shared/protein-quest-cache"
copy_method = "symlink"

[filter.residue]
cache_dir = "/shared/protein-quest-cache"
copy_method = "symlink"

[filter.resolution]
cache_dir = "/shared/protein-quest-cache"
copy_method = "symlink"

[filter.pdbe-quality]
cache_dir = "/shared/protein-quest-cache"
copy_method = "symlink"

[filter.secondary-structure]
cache_dir = "/shared/protein-quest-cache"
copy_method = "symlink"

[filter.combined]
cache_dir = "/shared/protein-quest-cache"
copy_method = "symlink"

[convert.structures]
cache_dir = "/shared/protein-quest-cache"
copy_method = "symlink"
