Haddock3 tutorial

Haddock3 is not only a tool, but also a set of training materials, allowing new user to understand the main aspects and functionalities available in haddock3.

The list of tutorials is available from our BonvinLab website -> education -> haddock3 -> tutorials

We have now also added a Jupyter notebooks directory to the source code. The Jupter notebooks can be directly started on Google Colab or on your own resource. Visit the haddock3 repository for instructions.

Another notobook, HADDOCK3-interface-analysis.py based on marimo is provided that allows to upload a complex and analyse the interface of the complex.

Please note that we are constantly adding new tutorials, and therefore new ones may appear from time to time.

Haddock2.X tutorial

Together with the development of haddock3, we are trying to update and port previously written tutorials made for the haddock2.X series to haddock3. If a specific tutorial is not available for haddock3, you can always refere to the haddock2.x tutorials to obtain input files and understand what are the key points required for a sucessful docking.