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Best practice guide
HADDOCK2.4 now supports docking of carbohydrates, however it has not been tested properly yet. It is in an experimental intense-development phase. A list of glycan residues supported by HADDOCK can be found here. This page consists of following chapters:
Optimal settings for docking of glycans
|Parameter||run.cns name||default value||optimal value|
|Cutoff for clustering||
More about optimal settings for different docking scenarios can be found here.
Any more questions about glycan docking with HADDOCK? Have a look at our HADDOCK bioexcel forum hosted by . There is a very high chance that your problem has already been addressed.