For editing your run.cns file enter the absolute path of your run.cns file
(e.g. /software/haddock/example/e2a-hpr/run1/run.cns):
Type haddock2.2 on the UNIX command line in the directory
where you have saved your run.cns.
HADDOCK also offers support for DNA. If one of the molecules is DNA and defined as DNA
in run.cns HADDOCK expects to find a file called
dna-rna_restraints.def in the data/sequence directory. This file allows
you to define standard A-, B- or custom restraints for DNA such as base-pairing,
puckering and backbone dihedral angles. You can edit using the same
mechanism as for run.cns (see above) a template file that can be found in
the protocols directory. Save the file as dna-rna_restraint.def into the
data/sequence directory.